PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG192100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 550aa    MW: 57954.3 Da    PI: 8.5718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG192100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12366409452
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 
                          +h + ErrRR+r+N++fe Lr llP+       K++Ka++L k+ +Y++
  Pavir.1KG192100.1.p 366 NHMISERRRRERLNESFEALRGLLPPG-----SKNDKATVLAKTLDYMN 409
                          78999********************95.....5**************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.79E-16362430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.764362411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-15365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-10366409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-12368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-5377416No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MDTLFVLGHE SRLRILQRAA VRLPGCAYLC AWAALPAAQP PASSSSAATS ARILCCLDAW  60
LCDDGASCRG DAAAGHVRAL FDAYRGSLCA AVSGCVPGWA YKDGRAFMEL PARDLAASAS  120
LPAQQQFYQL AAFMGCESGE IEVGMSTAAS GSPMSLESSL QQVFSEDFFQ QSLLEELLQL  180
PPTGPSSSSS SLPSVSVGSP AAEGSTSLLR TIAVTPAATP SSAGRHGRVH FPSPDADDAA  240
MAEAMLAVIS ASSSSALPTT PSTSTAAPPP GNHHHHHHNA RRWPRRRGTT TATAFRAYNA  300
ALAPRAPWRP PGAPGQRMIK MGISILRRMH MLRFSRERSG GTTAMAQRAQ EDEEDPPQAP  360
TSSQLNHMIS ERRRRERLNE SFEALRGLLP PGSKNDKATV LAKTLDYMNI LVAQIADLEA  420
RNRSLESRAH QHSNGGGGWK ERPYSSSERQ EVVVLQGQTG ASERVQVHVT TAAAGGAAAT  480
PSSSSSAAAG RREVIVRVEA RAAHGDVAEL VARALAVIKD MGCFTVAAVD GRRPGDGVAH  540
ATFTLRATV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370375ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057977e-36AP005797.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1131G07.
GenBankAP0149587e-36AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126107e-36CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660292.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLK3YZ320.0K3YZ32_SETIT; Uncharacterized protein
STRINGSi019540m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-13bHLH family protein